Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3842820	3842845	26	2 [0]	[0] 14	rfaL	O‑antigen ligase

TCTTGGGTGATTTATTATAATAAGCTATTAATGCAGCAACACAAATTATAGGGAACAGGAGTAGG  >  W3110S.gb/3842755‑3842819                                                                 | tCTTGGGTGATTTATTATAATAAGCTATTAATGCAGCAACACAAATTATAGGGAACAGGTGTAgg  >  1:1874067/1‑65 (MQ=255) tCTTGGGTGATTTATTATAATAAGCTATTAATGCAGCAACACAAATTATAGGGAACAGGAGTAgg  >  1:375187/1‑65 (MQ=255)                                                                 | TCTTGGGTGATTTATTATAATAAGCTATTAATGCAGCAACACAAATTATAGGGAACAGGAGTAGG  >  W3110S.gb/3842755‑3842819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑