Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3866402	3866422	21	42 [0]	[0] 34	mtlA	fused mannitol‑specific PTS enzyme IIABC components

GTGCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGA  >  W3110S.gb/3866337‑3866401                                                                 | gtgCTCGTTGTTCCGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1340453/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:6618/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1010370/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1838994/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1845157/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:197344/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:26397/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:280855/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:293334/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:369323/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:41656/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:604024/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1834555/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:664727/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:679069/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:796877/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:814806/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:829974/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:922686/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:942639/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:955829/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1575896/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1021129/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1091222/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1228705/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1245157/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1304948/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1312083/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1435685/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1457062/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1493308/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:177335/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1577529/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1599524/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1599587/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:16504/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1690331/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1730066/65‑1 (MQ=255) gtgCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1746749/65‑1 (MQ=255)             aCGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:541905/53‑1 (MQ=255)              cGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:1578573/52‑1 (MQ=255)                  cagcaATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGa  <  1:777360/48‑1 (MQ=255)                                                                 | GTGCTCGTTGTTACGGGCAGCAATACCAATCACCAGACGGGCAATGTCATCTTCTTCTTCACCGA  >  W3110S.gb/3866337‑3866401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑