Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3955639	3955780	142	41 [0]	[0] 76	yhjK	predicted diguanylate cyclase

TGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTG  >  W3110S.gb/3955574‑3955638                                                                 | tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCCCCGCGCTGATGATCATCACCTGTGAAACGCTg  >  1:334052/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:584134/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:197450/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:276213/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:300255/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:36400/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:402576/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:452344/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:574417/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:580614/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1881968/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:588399/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:688498/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:699719/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:735014/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:741258/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:744897/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:910952/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:926613/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:944413/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1581242/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1048461/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1060604/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1187468/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1231349/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1233378/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1496931/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1500271/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1524997/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:155360/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1573194/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1028476/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1647015/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:165128/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1652845/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1654529/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1685088/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1719308/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1810777/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:1831227/1‑65 (MQ=255) tGCTGGAGCAGGTTGTCGCACGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTg  >  1:327924/1‑65 (MQ=255)                                                                 | TGCTGGAGCAGGTTGTCGCGCGTAAACAAACCACCGCGCTGATGATCATCACCTGTGAAACCCTG  >  W3110S.gb/3955574‑3955638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑