Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4001227	4001306	80	75 [0]	[0] 20	[pitA]	[pitA]

TTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAT  >  W3110S.gb/4001163‑4001226                                                                | ttGCATGTTTTTGTAGGCCGGATAAGGCGTTGACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1876599/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:330043/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:434890/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:423501/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:385590/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:37248/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:366274/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:361408/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:358374/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:340598/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:337062/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:450897/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:316903/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:300258/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:219705/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:210479/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:207857/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1885797/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:185566/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:725242/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:995139/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:995045/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:969153/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:919721/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:896501/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:884825/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:873310/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:768877/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:759294/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1803121/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:656360/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:63488/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:613115/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:612438/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:572714/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:555520/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:504695/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:463612/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1182156/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1322556/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1300001/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1290419/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1272390/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1260674/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1257047/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1235160/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1183906/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1324131/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1180293/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1175364/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1155138/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1147200/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:112252/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1053529/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1046492/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1036306/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1536509/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1782720/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:178031/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1729787/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1712917/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1682909/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1649744/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1617518/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1579315/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:100790/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1413014/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1395667/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1386909/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:138069/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1378354/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1374994/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1346631/1‑64 (MQ=255) ttGCATGTTTTTGTAGGCCGGATAAGGCGTACACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1203389/1‑64 (MQ=255) ttGCATGTTTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAt  >  1:1571042/1‑64 (MQ=255)                                                                | TTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTAT  >  W3110S.gb/4001163‑4001226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑