Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4090108	4090339	232	54 [0]	[0] 6	[malP]	[malP]

AAGATAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAG  >  W3110S.gb/4090043‑4090107                                                                 | atgaTAAGGGGCTGGACGCAGTATTTAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:407525/63‑1 (MQ=255) aataTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:650606/62‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTTGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:565966/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:365106/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1724431/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1819217/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1820470/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1832403/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:266559/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:270323/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:283986/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:293731/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:307050/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:317155/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:353925/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:10949/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:37275/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:425867/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:608778/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:620985/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:682968/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:717224/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:84970/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1396337/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1102434/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1184404/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1714945/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1191136/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1111068/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1276065/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1279405/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1362648/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1477870/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1480136/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:149142/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1601491/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1163867/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1154698/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1136259/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:113297/65‑1 (MQ=255) aagaTAAGGTGCTGGACGCAGTATTGAAAGAGCGGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1211016/65‑1 (MQ=255)  agaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:460141/64‑1 (MQ=255)  agaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:545309/64‑1 (MQ=255)   gaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1624945/63‑1 (MQ=255)   gaTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:646018/63‑1 (MQ=255)    aTAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1026178/62‑1 (MQ=255)        ggTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1743750/58‑1 (MQ=255)            cTGGACGCAGTATAGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:972879/54‑1 (MQ=255)                aCGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:380498/50‑1 (MQ=255)                  gCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:488050/48‑1 (MQ=255)                  gCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1744897/48‑1 (MQ=255)                    aGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1639349/46‑1 (MQ=255)                       aTTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:1169914/43‑1 (MQ=255)                        ttGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAg  <  1:983094/42‑1 (MQ=255)                                                                 | AAGATAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAG  >  W3110S.gb/4090043‑4090107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑