Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4112891	4113143	253	55 [0]	[0] 76	yrfF	predicted inner membrane protein

TGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAG  >  W3110S.gb/4112826‑4112890                                                                 | tGCGCGCCTTTCATCGATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1578339/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGTATCCAGAATAACAg  <  1:1785048/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:588324/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:238822/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:247929/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:274557/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:276186/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:278315/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:278649/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:282064/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:300378/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:333369/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:403234/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:579457/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1803753/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:655939/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:701041/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:735703/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:763850/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:782732/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:786913/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:81046/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:831986/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:844820/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:849776/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:900511/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:962167/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:988596/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1411493/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1158600/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1178917/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1183146/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1205223/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1210644/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1261680/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1273031/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1312637/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1322886/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1385520/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:139400/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:189528/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1450598/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1475440/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:147912/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1481960/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1497895/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:157975/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1631027/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:168274/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1694344/65‑1 (MQ=255) tGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1792522/65‑1 (MQ=255)  gcgcgcCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:527785/64‑1 (MQ=255)   cgcgcCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1288053/63‑1 (MQ=255)   cgcgcCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1246229/63‑1 (MQ=255)   cgcgcCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAg  <  1:1057270/63‑1 (MQ=255)                                                                 | TGCGCGCCTTTCATCCATGAGAGAGTGAATTTCAGCGGCATATCCAGCGGGATCCAGAATAACAG  >  W3110S.gb/4112826‑4112890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑