Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4225542	4225657	116	49 [0]	[0] 28	arpA	regulator of acetyl CoA synthetase

AACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAAG  >  W3110S.gb/4225477‑4225541                                                                 | aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:576280/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1755979/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1801669/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1807746/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1814937/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1832593/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:257808/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:280537/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:32800/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:488433/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:52256/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1788390/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:59989/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:616429/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:616509/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:692067/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:699344/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:823779/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:861916/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:874897/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:955690/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:966873/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1435910/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1016543/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1038585/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1039133/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1080349/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1122349/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1166400/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1179684/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1199954/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1344899/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1418000/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1677261/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1440190/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1453814/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1454548/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1538479/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1541236/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1604950/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1651439/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGGGAGAAATTTTTCAGCTGAag  <  1:1010804/65‑1 (MQ=255) aaCCAACGCCAAAGTCTGG‑TTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1551425/64‑1 (MQ=255) aaCCAACGCCAAAGGCTGGATTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:855411/65‑1 (MQ=255)  aCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:355893/64‑1 (MQ=255)  aCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1399348/64‑1 (MQ=255)  aCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:1375023/64‑1 (MQ=255)      aCGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:39924/60‑1 (MQ=255)          cAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAag  <  1:38215/56‑1 (MQ=255)                                                                 | AACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGAAG  >  W3110S.gb/4225477‑4225541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑