Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4234480	4234500	21	99 [0]	[0] 68	yjbC	23S rRNA pseudouridine synthase

TGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGC  >  W3110S.gb/4234415‑4234479                                                                 | tGCCAATCCTCGGGGCAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1014546/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAATCGCCGTTTGTCTTCCGc  <  1:355493/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:700587/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:216851/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:654342/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:608448/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:606869/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:570931/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:562016/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:558237/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:539675/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:538426/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:450052/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:433816/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:430989/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:366947/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:320277/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:280629/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:264841/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:256285/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:247299/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:23762/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:236851/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:999096/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:893134/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1005090/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:993557/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:992179/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:984452/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:974368/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:972308/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:964115/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:958634/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:930779/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:915301/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:704155/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:87959/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:872909/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:869564/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:829905/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:798373/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:785503/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:772668/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:720604/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:718061/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:711927/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1378868/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1476655/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1878885/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1463944/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1459311/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1458836/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1453441/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1427141/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1423286/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1414825/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:139260/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1389039/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:146584/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1367169/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:135464/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1349888/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1276324/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1257104/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1205874/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1148066/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1059541/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1053444/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1043753/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1026200/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1496502/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1834182/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1801739/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1756118/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:175482/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1753956/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1744784/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1712458/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1703860/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1691009/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:168919/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1508159/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1565980/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1672483/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1610945/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGGTTGTCTTCCGc  <  1:327726/65‑1 (MQ=255) tGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAACAAGCGCCGTTTGTCTTCCGc  <  1:1777196/65‑1 (MQ=255) cgCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1110774/64‑1 (MQ=255)  gCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:575070/64‑1 (MQ=255)  gCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:255963/64‑1 (MQ=255)  gCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:69867/64‑1 (MQ=255)  gCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1283242/64‑1 (MQ=255)  gCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1704983/64‑1 (MQ=255)  gCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:432800/64‑1 (MQ=255)     aaTCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:976260/61‑1 (MQ=255)       tCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:549837/59‑1 (MQ=255)                  gTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1708231/48‑1 (MQ=255)                  gTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:451099/48‑1 (MQ=255)                             gTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGc  <  1:1296672/37‑1 (MQ=255)                                                                 | TGCCAATCCTCGGGACAGTGACCAAAAAGTGCAAAGTTAAAAAAGAAGCGCCGTTTGTCTTCCGC  >  W3110S.gb/4234415‑4234479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑