Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4408253	4408268	16	43 [0]	[0] 2	hflC	modulator for HflB protease specific for phage lambda cII repressor

CAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGACT  >  W3110S.gb/4408189‑4408252                                                                | cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTTATCGTCGAct  <  1:1202037/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1848214/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:956548/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:186352/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:205966/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:2768/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:296870/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:299067/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:379153/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:431556/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:444989/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:48565/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:489762/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:545342/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:643088/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:692013/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:764977/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:844794/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:85733/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:924036/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1041948/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1490157/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1220094/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1232737/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1256440/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1364656/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1369990/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1396806/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1443993/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1805960/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:150110/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1543111/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1545279/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:162345/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1685567/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1688245/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1712056/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1771108/64‑1 (MQ=255) cAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1783019/64‑1 (MQ=255)  ataCCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:931527/61‑1 (MQ=255)                         cGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1292377/40‑1 (MQ=255)                          gCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:452526/39‑1 (MQ=255)                             ttGTGACCAAAGAGAAGAAAGACCTGATCGTCGAct  <  1:1352588/36‑1 (MQ=255)                                                                | CAGACCATGGACAACCAGGCCGACCGCTTTGTGACCAAAGAGAAGAAAGACCTGATCGTCGACT  >  W3110S.gb/4408189‑4408252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑