Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4550495	4550658	164	45 [0]	[0] 7	fimD	outer membrane usher protein, type 1 fimbrial synthesis

TGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGC  >  W3110S.gb/4550431‑4550494                                                                | tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGCCAGATCATCAGGTAGc  >  1:747581/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:621581/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1818749/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1835351/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1841009/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1857772/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:194174/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:19472/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:222897/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:305408/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:372659/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:448034/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:554578/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1810801/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:763660/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:767600/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:809254/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:843342/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:859976/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:88648/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:909895/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:927034/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:939636/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1312420/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1088566/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1108992/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1110142/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1152627/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1158638/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1192595/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1195021/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:12690/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1282656/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1294753/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1079660/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1339700/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1467987/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1522895/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1586762/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1601226/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1649835/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1659449/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1664845/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1732761/1‑64 (MQ=255) tGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGc  >  1:1796172/1‑64 (MQ=255)                                                                | TGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGC  >  W3110S.gb/4550431‑4550494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑