Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4644509	4644950	442	41 [0]	[0] 7	arcA	DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA

CGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAG  >  W3110S.gb/4644444‑4644508                                                                 | cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1878079/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:938217/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:936048/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:933547/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:927675/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:890034/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:78310/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:724027/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:671198/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:57687/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:423939/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:35474/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:34262/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1862188/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1747274/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:171834/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1243192/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1700538/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1251017/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1527949/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1420954/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1474097/65‑1 (MQ=255) cGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1445642/65‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1471992/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1248801/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1389257/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:923598/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:833648/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:792563/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:787650/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:755818/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:64142/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:485586/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1225088/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1611520/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1726404/64‑1 (MQ=255)  gggACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGACGCGGAACTCGCTGCGCGGCAg  <  1:479934/64‑1 (MQ=255)                        ttCACAGAAGTGAAGCATGTCGCGGAACTCGCTGCTCGGCAg  <  1:1515358/42‑1 (MQ=255)                          cacaGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1454704/40‑1 (MQ=255)                           acaGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1602861/39‑1 (MQ=255)                            caGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAg  <  1:1708959/38‑1 (MQ=255)                                                                 | CGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAG  >  W3110S.gb/4644444‑4644508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑