Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1147065	1147070	6	40 [0]	[0] 39	rluC	23S rRNA pseudouridylate synthase

TCTCTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCA  >  W3110S.gb/1147000‑1147064                                                                 | tctcTGCATGAGCAATTACGTGAGAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1309984/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAATAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1059122/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1613739/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1486195/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:165019/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:199930/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:32400/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:390211/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:40670/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:413824/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:434320/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:453645/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:464261/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:49015/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:509793/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:525038/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:58841/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:72570/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:952872/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:989204/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1336431/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1017369/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1102589/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1120756/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1190853/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1212241/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1256772/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1266896/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1318202/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1015229/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1342821/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:135024/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1352174/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1358435/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1372678/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:1431423/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCa  >  1:143948/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCCCGGTCa  >  1:21664/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGAGCGGTCa  >  1:369212/1‑65 (MQ=255) tctcTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACATGGCGCTGGTGCGCGGTCa  >  1:1192666/1‑65 (MQ=255)                                                                 | TCTCTGCATGAGCAATTACGTGAAAAAGGGATGCAAAAAGATTACCTGGCGCTGGTGCGCGGTCA  >  W3110S.gb/1147000‑1147064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑