Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1201619	1201808	190	47 [0]	[0] 30	intE	predicted integrase

CGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAT  >  W3110S.gb/1201554‑1201618                                                                 | cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:539463/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:183846/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:218507/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:266480/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:278109/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:293595/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:295706/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:379/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:379924/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:406838/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:510072/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:530963/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1812067/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:572399/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:592814/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:631312/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:662922/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:683305/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:754733/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:763675/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:81558/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:89378/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:936297/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:996354/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:180732/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1020559/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1081060/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1102953/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1169132/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:120264/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1304039/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:134548/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1398933/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1446975/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1455347/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1638070/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1638693/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1665382/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1668241/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:176031/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1761050/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1761587/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1762871/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1792937/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1012733/1‑65 (MQ=255) cGGCAGCGGGCTACTACATCGCGGAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt  >  1:1566701/1‑65 (MQ=255) cGGCACCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGCAAt  >  1:1540217/1‑65 (MQ=255)                                                                 | CGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAT  >  W3110S.gb/1201554‑1201618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑