Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1290514	1290577	64	56 [0]	[0] 126	ychJ	conserved hypothetical protein

GTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCA  >  W3110S.gb/1290449‑1290513                                                                 | gTCCTGCCAACAATGTTCAAATACGGTCAATCTCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:433383/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:657478/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1786187/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:274165/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:314490/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:317167/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:329469/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:354296/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:403747/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:461764/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:517788/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:522594/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:535657/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:573789/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:176531/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:670235/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:672794/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:69080/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:735669/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:73738/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:783379/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:797706/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:829435/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:856343/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:875152/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:911400/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:939756/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:995914/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1393841/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1080076/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1082809/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1113740/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1162213/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1240970/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1246227/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1253255/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1294884/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1324547/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1341250/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1341715/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1346620/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1384649/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1037817/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1430990/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1452671/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1458465/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:148227/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1495724/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1552996/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1561008/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1563328/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1615184/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1643176/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1696067/1‑65 (MQ=255) gTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1738776/1‑65 (MQ=255) gTCCTGCAAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCa  >  1:1430023/1‑65 (MQ=255)                                                                 | GTCCTGCCAACAATGTTCAAATACGGTCAATCCCAACCATTCAGTATGCGCAAATCCGGCCATCA  >  W3110S.gb/1290449‑1290513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑