Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1292142	1292192	51	78 [0]	[0] 125	rssB	response regulator of RpoS

GCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAA  >  W3110S.gb/1292077‑1292141                                                                 | gCCACTGAAAATATGGCAGATTTTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:296166/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:408278/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:597164/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:592542/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:579378/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:572/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:565535/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:513005/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:445291/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:444180/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:431515/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:612117/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:396380/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:356035/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:330847/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:323643/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:310452/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:299369/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:271499/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:253807/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:769723/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:987262/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:943494/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:912336/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:880347/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:832702/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:830254/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:816028/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:813187/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:808437/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:22830/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:763492/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:716562/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:654970/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:648942/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:648873/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:644974/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:639481/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:618873/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1235691/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:142986/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1424647/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1396699/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1350244/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1325945/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1291633/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1289539/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1284885/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1257888/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1454836/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1234867/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1228738/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1223667/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:122270/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1141753/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:112444/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:111121/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1088460/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1019601/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1657879/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1864447/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1859714/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:183280/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1783038/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1775945/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1725188/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1720405/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1683562/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1661744/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1019131/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1635029/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1585504/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1575834/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1562320/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1535584/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1505393/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1479276/1‑65 (MQ=255) gCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGaa  >  1:1469340/1‑65 (MQ=255)                                                                 | GCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAA  >  W3110S.gb/1292077‑1292141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑