Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1322060	1322171	112	93 [0]	[0] 33	trpD	fused glutamine amidotransferase (component II) of anthranilate synthase and anthranilate phosphoribosyl transferase

TTTCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGA  >  W3110S.gb/1321995‑1322059                                                                 | tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGTAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1549896/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCTGGTGTGATACTTCGGCGCAAAGAGGa  <  1:124391/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCTGTGTGATACTTCGGCGCAAAGAGGa  <  1:1406415/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCATAGAGGa  <  1:1639922/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAagaaga  <  1:375300/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:46927/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:596503/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:561559/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:544268/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:51004/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:502311/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:483344/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:479551/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:477072/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:59681/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:467973/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:465848/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:461363/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:435391/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:337670/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:230632/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:216229/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:195451/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1040087/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:787002/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:99064/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:948077/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:936733/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:893960/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:866816/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:864933/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:861365/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:853854/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:851727/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:836754/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1804514/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:779744/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:762159/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:759284/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:724533/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:722183/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:666963/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:658495/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:641663/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:609093/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:597660/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1242532/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1459616/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1410068/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1800078/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1404089/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1386996/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1383673/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1363108/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1273678/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1243012/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1408050/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1199649/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:113630/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1132037/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1124491/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1093678/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1075649/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1069718/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1049000/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1721898/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1691087/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1677043/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1635737/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1610642/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1704152/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1592240/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1726183/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1728094/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1579073/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1578942/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1549869/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1737729/65‑1 (MQ=255) tttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1479077/65‑1 (MQ=255)  ttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:48418/64‑1 (MQ=255)  ttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:115084/64‑1 (MQ=255)  ttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:842088/64‑1 (MQ=255)  ttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:117528/64‑1 (MQ=255)  ttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1228710/64‑1 (MQ=255)  ttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1342795/64‑1 (MQ=255)  ttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:469536/64‑1 (MQ=255)  ttCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1384840/64‑1 (MQ=255)   tCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1456995/63‑1 (MQ=255)              cGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1265503/52‑1 (MQ=255)                aaCCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:200447/50‑1 (MQ=255)                aaCCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1825298/50‑1 (MQ=255)                    ggCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGa  <  1:1150389/46‑1 (MQ=255)                     gCATCGCGTGGCTGAATCCGGTTTGATACTTCGGCGCAAAGAGGa  <  1:473903/45‑1 (MQ=255)                                                                 | TTTCAGTTGCTGGCGAACCGGCATCGCGTGGCGGAATCCGGTGTGATACTTCGGCGCAAAGAGGA  >  W3110S.gb/1321995‑1322059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑