Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1531097	1531636	540	69 [0]	[0] 30	rhsE	rhsE element core protein RshE

CTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCC  >  W3110S.gb/1531032‑1531096                                                                 | cTGCCAGGGCGGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1244313/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:6560/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:698170/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:564128/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:516843/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:464900/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:461549/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:452142/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:378959/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:333195/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:305823/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:286042/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:283826/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:216867/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1873698/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1862660/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1841810/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1829706/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:827602/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:962838/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:952629/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:926032/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:89370/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:860852/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:848680/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:848621/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:842919/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:696184/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:819302/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:805668/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:750973/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:71482/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:713682/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:710598/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1813993/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1199721/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1338974/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1329508/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1327533/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1326975/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:130720/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:128570/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1274567/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1262850/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1370796/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:117961/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1151887/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1112704/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1104613/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1084276/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1075638/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1039907/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1618008/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1024236/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1759914/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1661701/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1646165/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1632262/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1628275/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1620458/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1828642/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1584725/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1548695/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1521459/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:147094/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1451477/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1436411/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATcc  >  1:1422992/1‑65 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGACACCGGCACTACGAAcc  >  1:1728612/1‑65 (MQ=255)                                                                 | CTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCC  >  W3110S.gb/1531032‑1531096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑