Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1593348	1593480	133	59 [0]	[0] 167	hipA	regulator with hipB

TCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTAA  >  W3110S.gb/1593283‑1593347                                                                 | tCATTATCAACGCTTTGGCTGAGATCGAGCGTCTCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1818596/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:3063/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1700530/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1715192/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1717786/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1788169/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1801117/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1805923/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1812275/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1817617/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1856435/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:192500/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:219344/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:223445/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:270308/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1666413/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:359086/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:471075/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:49378/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:520812/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:538601/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:596404/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:606673/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:628220/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:660458/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:73905/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:746136/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:874452/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:957287/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1286145/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1029452/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1044828/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1080790/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1095874/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:110677/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:111087/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1112534/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1175561/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1175635/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1177126/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1255844/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1274300/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1275755/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1016380/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1287239/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1287390/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1336669/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1337782/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1348469/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1364370/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1449992/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1468531/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1490814/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1497090/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1511880/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1514661/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1596377/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTaa  >  1:1622887/1‑65 (MQ=255) tCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTCCGCCAATCGGTaa  >  1:821654/1‑65 (MQ=255)                                                                 | TCATTATCAACGCTTTGGCTGAGATCGAGCGTCGCATTGGGCTGCCTGATTTCGCCAATCGGTAA  >  W3110S.gb/1593283‑1593347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑