Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1653962	1654034	73	4 [0]	[0] 44	intQ	predicted defective integrase

GAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTC  >  W3110S.gb/1653897‑1653961                                                                 | gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGtcattc  <  1:1189496/65‑1 (MQ=255) gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGtcattc  <  1:686490/65‑1 (MQ=255)  agaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGtcattc  <  1:1239886/64‑1 (MQ=255)                    cGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGtcattc  <  1:221848/46‑1 (MQ=255)                                                                 | GAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTC  >  W3110S.gb/1653897‑1653961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑