Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2003543	2003571	29	43 [1]	[0] 24	fliA	RNA polymerase, sigma 28 (sigma F) factor

CCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGCA  >  W3110S.gb/2003480‑2003543                                                               |  ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:533025/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1003096/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1820717/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1830281/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1853122/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:21913/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:223285/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:344760/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:409909/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:435464/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1819649/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:620298/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:632719/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:661526/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:763868/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:874957/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:918378/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:931316/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:963349/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:968520/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1798436/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1119090/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1134999/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1182757/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1183594/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1215270/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1250644/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1274429/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1357397/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1359422/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1392210/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1446575/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1506172/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1542597/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1636952/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:16646/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1672641/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1730866/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:1751793/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:180734/1‑63 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGCa  >  1:448705/1‑64 (MQ=255) ccACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTCGGCGATAATCGGc   >  1:513994/1‑63 (MQ=255) ccACTCATCCTAGGAGAAGAGGTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGc   >  1:856837/1‑63 (MQ=255)                                                               |  CCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCGGCA  >  W3110S.gb/2003480‑2003543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑