Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2006843	2006921	79	86 [0]	[0] 49	fliD	flagellar filament capping protein

CGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGG  >  W3110S.gb/2006778‑2006842                                                                 | cGGGCAACCAGACGCTAACCATCACTCAGGGCACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1221639/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:399524/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:624292/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:60097/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:595443/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:577209/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:575797/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:556478/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:535291/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:525786/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:45782/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:443370/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:433254/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:673606/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:372228/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:35081/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:331443/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:328676/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:300615/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:283022/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:274925/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:266721/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:254057/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:780047/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:965882/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:962178/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:962096/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:93477/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:904660/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:875494/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:858851/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:840727/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:794679/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:79208/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:21393/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:777643/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:741208/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:735837/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:720270/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:714048/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:713414/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:708552/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:696025/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:675602/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1324116/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:147167/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1469729/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1465331/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1464827/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1462773/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1448179/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1441788/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1395449/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1356986/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1338935/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1478860/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1240333/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1202528/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1195577/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:119199/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1180020/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1177863/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1161445/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1146642/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1115262/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1666981/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:198769/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:185612/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1855093/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1840473/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1820085/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1790559/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:176654/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1742941/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1734273/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1716695/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1096588/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1663875/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1663303/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1654708/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1628994/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1548525/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1537736/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1537263/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1525724/1‑65 (MQ=255) cGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTgg  >  1:1499279/1‑65 (MQ=255)                                                                 | CGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCGATTAAAGACTGG  >  W3110S.gb/2006778‑2006842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑