Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2017459	2017554	96	78 [0]	[0] 74	fliG	flagellar motor switching and energizing component

TCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGT  >  W3110S.gb/2017394‑2017458                                                                 | tcagCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:973757/4‑65 (MQ=255) tCCGCAAATTTTCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:678003/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCTGATATTCTGGCgt  >  1:423219/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:423121/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:574200/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:560430/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:551290/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:527993/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:505636/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:468615/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:450489/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:670238/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:352160/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:296072/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:278774/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:260638/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:239236/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:230234/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:226403/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1038454/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:860065/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:994618/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:988371/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:980781/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:94380/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:938425/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:923636/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:890991/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:87206/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:649108/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:839838/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:825108/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:731559/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:727017/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:719536/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:718209/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:672549/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:211464/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1163966/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1837313/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1517898/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1502423/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1469880/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1443872/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:135198/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:122577/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1203810/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1177076/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:152544/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1113039/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1080992/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1074634/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:106898/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1066463/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1054812/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:105251/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1040279/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1651099/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1821263/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1788311/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1760840/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1752421/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1748098/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1728004/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:172301/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1694590/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:16657/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1659167/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1546628/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1645485/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:161603/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1597385/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1577247/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1565872/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1548872/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGAgt  >  1:718402/1‑65 (MQ=255) tCCGCAAATTATCGCCACCATTCTGCTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:488115/1‑65 (MQ=255) tCCACAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgt  >  1:1503181/1‑65 (MQ=255)                                                                 | TCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGT  >  W3110S.gb/2017394‑2017458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑