Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2056407	2056426	20	35 [0]	[0] 13	shiA	shikimate transporter

CGACTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCGTACTGGTA  >  W3110S.gb/2056342‑2056406                                                                 | cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:562741/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:247762/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:258473/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:385360/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:42567/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:47042/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:529291/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:539812/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:545418/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1842595/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:632502/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:703694/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:706217/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:755545/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:828342/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:869021/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:911202/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:995268/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1711558/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1084078/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1101843/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:110993/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1119142/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1142288/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1247761/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1373212/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1434717/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1454986/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1515005/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1518686/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1547977/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1021352/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCATTTCCTGTTTAGCATCgtactggta  >  1:1440930/1‑65 (MQ=255) cgacTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTACTTTCCTGTTTAGCATCgtactggta  >  1:142076/1‑65 (MQ=255) cgacTGACGAACAGTCTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCgtactggta  >  1:1276073/1‑65 (MQ=255)                                                                 | CGACTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCGTACTGGTA  >  W3110S.gb/2056342‑2056406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑