Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2126881	2127005	125	47 [0]	[0] 111	wcaI	predicted glycosyl transferase

CGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACCG  >  W3110S.gb/2126816‑2126880                                                                 | cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:53259/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1011171/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1844247/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1856719/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1875984/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:190546/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:228796/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:23259/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:301030/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:319161/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:485512/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:489249/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1822284/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:627381/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:668663/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:680863/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:811347/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:86218/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:865957/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:884734/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:925637/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:982608/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:991798/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1441700/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1069926/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1130766/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1178283/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1267585/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1272273/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1294918/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:130032/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1368050/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1374846/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1403861/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:144039/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1456798/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:149572/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1498796/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1511728/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1599784/65‑1 (MQ=255) cGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1634183/65‑1 (MQ=255) cGCAATGCCAGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:373485/65‑1 (MQ=255)  gCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1749253/64‑1 (MQ=255)  gCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1481900/64‑1 (MQ=255)  gCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1486928/64‑1 (MQ=255)          cGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:1610296/56‑1 (MQ=255)           ggAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACcg  <  1:44577/55‑1 (MQ=255)                                                                 | CGCAATGCCCGGAAAGGTTTCGCAAAGCTGCCCCAGTTCTGTGTAGGCTTCAGCAGTAATCACCG  >  W3110S.gb/2126816‑2126880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑