Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2217515	2217893	379	56 [0]	[0] 2	yehU	predicted sensory kinase in two‑component system with YehT

CAGCAATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGC  >  W3110S.gb/2217450‑2217514                                                                 | cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGGTCAGc  >  1:1178434/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:509870/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1859635/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:191516/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:218155/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:281250/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:281283/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:303086/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:304950/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:350536/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:357820/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:373913/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:401966/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:436404/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:44524/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:469022/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1788284/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:526480/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:652180/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:66653/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:692182/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:712344/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:739455/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:748573/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:75870/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:770554/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:77140/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:873047/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:892818/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1499830/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1060845/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1077093/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1101512/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1179022/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1204476/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1222345/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:13353/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1353411/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1357954/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1426328/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1433626/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:144573/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1492968/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1011923/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1509251/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1525539/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1591266/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1591899/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1637900/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1692976/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1694187/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1706196/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:17068/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1731464/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1750898/1‑65 (MQ=255) cagcaATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGc  >  1:1768488/1‑65 (MQ=255)                                                                 | CAGCAATATTACTCACCAGACGCACCGCATCTTCATAAGGTCGGGCGATCGCAAGGATGATCAGC  >  W3110S.gb/2217450‑2217514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑