Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2471853	2471857	5	46 [0]	[0] 342	argW/intS	tRNA‑Arg/predicted prophage CPS‑53 integrase

GTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGT  >  W3110S.gb/2471806‑2471852                                               | gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:67500/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:281715/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:286143/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:286848/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:330976/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:351667/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:391513/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:473686/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:491903/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:598751/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:632395/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:650581/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:240141/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:67501/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:770961/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:802439/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:814848/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:818897/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:852017/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:892201/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:909787/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:910276/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:911846/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1603876/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1146084/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1199348/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1287952/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1289774/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1325525/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1338550/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1353971/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1384946/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1515027/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1538123/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1560451/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1097298/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1641367/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1689576/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1702721/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1724630/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1726137/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1776224/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1872257/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:1875141/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:206724/1‑47 (MQ=255) gTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGt  >  1:227365/1‑47 (MQ=255)                                               | GTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGT  >  W3110S.gb/2471806‑2471852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑