Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2755074	2755076	3	18 [0]	[0] 79	intA	integrase

CTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTA  >  W3110S.gb/2755077‑2755141 |                                                                 cTCAGGAACATCAGAGAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:118195/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAgg                         >  1:1810627/1‑42 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCaa                     >  1:919065/1‑46 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCa                      >  1:140635/1‑45 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAAcc                 >  1:450393/1‑50 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCaa               >  1:414963/1‑52 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGtt   >  1:335079/1‑64 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:50803/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:722362/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:697540/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:671608/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:621820/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:606993/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:583453/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:555439/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:528946/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:511012/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:783969/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:447679/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:40230/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:39415/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:384918/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:359416/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:907805/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:998799/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:970792/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:953240/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:951215/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:940345/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:935767/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:932807/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:922180/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:91824/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:748104/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:88580/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:864822/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:863942/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:854692/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:840416/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:800978/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:798883/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:322729/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1316509/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1526384/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1507035/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1472274/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1467632/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1448243/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1403005/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:136937/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1365387/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1326533/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1574971/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:128415/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1273453/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1250107/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1233813/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1172150/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1131371/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1104146/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1053169/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1794399/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1027543/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:256951/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:224989/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1883955/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:187108/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1853516/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1847036/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1837550/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:349879/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1733286/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1685198/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1656614/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1626116/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:160617/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:1597647/1‑65 (MQ=255) cTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTa  >  1:158850/1‑65 (MQ=255) cTCAGGAACAACAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCaa               >  1:1759268/1‑52 (MQ=255) |                                                                 CTCAGGAACATCAGAAAGAACAGGTGAGGAATTCTCAAGAGGCCAAAACCAATACCTTCTTGTTA  >  W3110S.gb/2755077‑2755141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑