Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2865803	2865877	75	53 [0]	[0] 68	rpoS	RNA polymerase, sigma S (sigma 38) factor

GCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGG  >  W3110S.gb/2865878‑2865942 |                                                                 gCCATAACGGCGGTCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1332871/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCATACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:401161/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGCCGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:722966/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:581410/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:658311/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:655616/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:645768/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:637601/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:63564/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:620400/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:595321/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:70306/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:577130/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:537497/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:504328/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:464563/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:42369/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:390493/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:366950/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:688616/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:364105/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:709462/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:71283/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:740649/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:753063/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:786771/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:859829/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:866148/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:90201/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:902986/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:929736/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:959958/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:962372/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:970236/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:9747/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1309543/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1507857/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1415984/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1406537/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1368600/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1364395/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1357243/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1335762/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:13156/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:157699/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1290041/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1239107/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1211490/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:119875/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1154117/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1060686/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1038226/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1016695/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1579120/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1593140/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1649993/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1693304/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1707879/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1724276/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1763641/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1768726/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1806831/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1815748/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:1886299/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:203906/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:273803/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:306536/65‑1 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg  <  1:32011/65‑1 (MQ=255) |                                                                 GCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGG  >  W3110S.gb/2865878‑2865942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑