Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3076117	3076845	729	2 [1]	[0] 57	[cmtA]	[cmtA]

GACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTCCC  >  W3110S.gb/3076846‑3076910 |                                                                 gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTaa                      >  1:1170245/1‑45 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGaa                 >  1:1102092/1‑50 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGaa                 >  1:1707174/1‑50 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGa                  >  1:1881452/1‑49 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGa                  >  1:864255/1‑49 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:50673/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:280618/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:304871/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:312708/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:351091/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:395563/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:411724/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:440755/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:441160/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:454520/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:489809/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:499178/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:499285/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1126416/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:516616/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:524786/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:626229/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:627361/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:669687/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:732119/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:800107/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:853938/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1110301/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:9503/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:982430/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1616430/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1147182/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1273120/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1301583/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1306565/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1340631/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1360349/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1371097/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1495286/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1518320/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1522678/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1609626/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:238235/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1665061/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1119920/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1741325/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1741902/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1767893/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1776771/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1861776/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:1879999/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTccc  >  1:212694/1‑65 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTcc   >  1:166867/1‑64 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTcc   >  1:1508657/1‑64 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTcc   >  1:1059071/1‑64 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTcc   >  1:945849/1‑64 (MQ=255) gACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTcc   >  1:268013/1‑64 (MQ=255) |                                                                 GACCTGGGTTAGAGGCCACCATAAAGAAGATGGATTTACCGTTAACCGAAGCCTGTTGCATTCCC  >  W3110S.gb/3076846‑3076910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑