Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3160562	3160797	236	33 [0]	[0] 32	sufI	repressor protein for FtsI

ATGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGT  >  W3110S.gb/3160798‑3160862 |                                                                 aTGGTTGGGGATAGGCATCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1741324/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:227992/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:177375/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1806176/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1833326/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1844902/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:192001/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:224055/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:226283/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:902259/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:233967/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:32242/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:35080/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:395541/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:523522/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:862822/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1082812/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1740961/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:168146/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1623740/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1555066/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1531083/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1486788/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1444907/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1404735/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1395473/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1383213/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1334657/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1333610/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1264594/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1255093/65‑1 (MQ=255) aTGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGt  <  1:1188260/65‑1 (MQ=255) |                                                                 ATGGTTGGGGATAGGCAGCGACTTGCTGACTTCATCTTCCACCAGCCACATTCCGGCAAGGCCGT  >  W3110S.gb/3160798‑3160862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑