Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3346876	3346885	10	47 [0]	[0] 49	ptsN	sugar‑specific enzyme IIA component of PTS

ATCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACG  >  W3110S.gb/3346886‑3346950 |                                                                 aTCATTACGGATACCGAAGGTACTCCGGTTGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:969942/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGGGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:126242/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGtt                          >  1:1276330/1‑41 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGAc   >  1:1132387/1‑64 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGAc   >  1:227707/1‑64 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGAc   >  1:1491093/1‑64 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1877/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1848898/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:250722/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:261778/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:286629/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:457336/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:465336/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:508172/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:510711/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:511471/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:538754/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:553617/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:588188/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:612270/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:786682/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:858092/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:882702/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:916150/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:922990/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:944722/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:170127/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1024237/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1104296/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1225099/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1351543/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1482241/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1494891/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1619581/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1641901/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:187268/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1706556/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1709324/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1715603/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1774098/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1794846/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1827147/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1842427/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:184551/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1003909/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACg  >  1:1864358/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTATCTTTTAGACg  >  1:913583/1‑65 (MQ=255) aTCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGACTCTTTTa      >  1:1526070/1‑61 (MQ=255) aTCATAACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAg     >  1:1340687/1‑62 (MQ=255) |                                                                 ATCATTACGGATACCGAAGGTACTCCGGATGAAGCGTAGTTATTCGGTAATGTCTCTTTTAGACG  >  W3110S.gb/3346886‑3346950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑