Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3434293	3434339	47	84 [0]	[0] 65	zraS	sensory histidine kinase in two‑component regulatory system with ZraR

TCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCGG  >  W3110S.gb/3434340‑3434404 |                                                                 tCCTTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:966074/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTTATTTCTGCATTTCATCCgg  <  1:1573690/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:384181/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:566884/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:557837/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:534018/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:525122/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:523710/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:51621/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:468525/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:620283/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:352622/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:335910/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:283245/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:256289/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:236345/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1862412/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:606815/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1850916/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:653193/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:710205/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:721590/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:736979/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:782395/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:787930/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:809862/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:833519/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:835288/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:844693/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:915148/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:925884/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:982292/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:989956/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1551961/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1119566/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1143365/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1159198/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:116150/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1193968/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1206811/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:123591/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1256293/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:127963/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1335689/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1347971/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1410735/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1463551/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1486036/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1486704/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:108262/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1571087/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1596361/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1617155/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1617580/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1625163/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1651878/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1652556/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1787196/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1793728/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1796878/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1825493/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1843136/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGGTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1558552/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCGCCAGCGGGAGGTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:1802464/65‑1 (MQ=255) tCCGTTTTCCCAAGCAGCCACCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCgg  <  1:204890/65‑1 (MQ=255) |                                                                 TCCGTTTTCCCAAGCAGCCGCCAGCGGGAGTTTTCCTCTGGCTTTAATTTCTGCATTTCATCCGG  >  W3110S.gb/3434340‑3434404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑