Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3493266	3493390	125	40 [0]	[0] 37	frwC	predicted enzyme IIC component of PTS

ACCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGC  >  W3110S.gb/3493391‑3493455 |                                                                 aCCAGTGCCTCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:711133/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:707482/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:339842/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:409787/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:412239/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:451063/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:478454/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:593137/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:617883/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:669078/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:689738/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:339426/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:716462/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:879529/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:880874/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:892410/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:902098/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:972115/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:980142/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1594644/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1156198/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:116070/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1258412/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1267184/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1318569/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1442935/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:152059/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1567674/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1101969/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1668800/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1724644/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1779633/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1801363/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1811349/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:1880613/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:253671/65‑1 (MQ=255) aCCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGc  <  1:336719/65‑1 (MQ=255) |                                                                 ACCAGTGCCGCTTTGCCGGTTTCGCGCTCTTCTGCGGAGAAATTTTTACGACCAATCAGCGTCGC  >  W3110S.gb/3493391‑3493455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑