Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3495265	3495270	6	39 [0]	[0] 39	ptsA	fused predicted PTS enzymes Hpr component, enzyme I component, and enzyme IIA component

TGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGATTGTTG  >  W3110S.gb/3495271‑3495335 |                                                                 tGGCTGATGCACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1885386/1‑65 (MQ=255) tGGCTGATGATCTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1147933/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCCCCTCAAAGGAttgttg  >  1:311756/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCCCCTCAAAGGAttgttg  >  1:313961/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:640775/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1107858/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1162591/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:322019/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:413882/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:502097/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:532225/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:292984/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:642477/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:6539/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:658501/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:697095/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:854666/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:89999/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:937316/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1534876/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1299548/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1300249/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1331954/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1393076/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1425481/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1517441/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:187540/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:160670/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1677887/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:1749124/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:176550/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgttg  >  1:178432/1‑65 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgtt   >  1:530505/1‑64 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgtt   >  1:1754508/1‑64 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgtt   >  1:314292/1‑64 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgtt   >  1:70392/1‑64 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgtt   >  1:812624/1‑64 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGAttgt    >  1:1767426/1‑63 (MQ=255) tGGCTGATGAACTGACCCCCAGCCAGTTCCTAGAACTGGATAAAAATCACCTCAAAGGAttgtt   >  1:1379129/1‑64 (MQ=255) |                                                                 TGGCTGATGAACTGACCCCCAGCCAGTTCCTCGAACTGGATAAAAATCACCTCAAAGGATTGTTG  >  W3110S.gb/3495271‑3495335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑