Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3543129	3543239	111	103 [0]	[0] 20	[rhaD]	[rhaD]

AACATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTC  >  W3110S.gb/3543240‑3543303 |                                                                aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGt   >  1:1037650/1‑63 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGt   >  1:153024/1‑63 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:380757/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:910413/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:907323/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:88293/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:86174/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:720102/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:708186/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:558173/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:502577/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:1007624/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:37817/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:205126/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:176766/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:1725867/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:1385036/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:1360573/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:1093095/1‑64 (MQ=255) aaCATGATCCGCAAAGCCTTTGTCACGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTc  >  1:987610/1‑64 (MQ=255) |                                                                AACATGATCCGCAAAGCCTTTGTCATGCAGGTAAACCCCGACGCCCACGAAGAGTATCAGCGTC  >  W3110S.gb/3543240‑3543303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑