Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3839845	3839993	149	4 [0]	[0] 88	rfaY	lipopolysaccharide core biosynthesis protein

GCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTAAAA  >  W3110S.gb/3839994‑3840058 |                                                                 gCGTGCTTCAGCGCAGCGTAAAGCGAGAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1479761/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:372159/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:523197/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:511694/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:509308/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:508939/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:505248/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:464198/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:463151/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:424249/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:420121/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:406758/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1002664/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:364195/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:356944/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:342537/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:325686/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:315628/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:311454/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:297435/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:259688/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:247346/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:242450/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:742900/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:993856/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:916667/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:911569/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:857113/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:848679/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:845328/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:834096/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:83103/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:757577/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:754697/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:525800/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:717251/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:648164/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:605647/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:593824/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:590203/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:575324/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:566573/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:559641/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:558446/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1269635/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1441454/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1417516/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1415385/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1394379/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1376809/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1355152/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:133644/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:130671/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:12886/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1278609/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1480457/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1254432/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1230308/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1192175/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1156017/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1148445/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1146553/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1142063/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1133201/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1095510/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1055437/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1702319/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:203714/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:186521/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1860855/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1839454/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1833394/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1813794/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1805069/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1727544/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1713999/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:215835/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1678250/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1672517/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1653853/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1629722/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1618671/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1595395/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:159112/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1516643/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:1514410/65‑1 (MQ=255) gCGTGCTTCAGCGCAGCGTAAAGAGAAAGATCGTATTGACTTAGAGCGTCATTACTGTATTaaaa  <  1:377657/65‑1 (MQ=255) gCGTGCTTCAGAGCAGCGTAAAGCGAAAGAGCGTATTGACTTAGAGCGTCATTACGGTATTaaaa  <  1:254427/65‑1 (MQ=255) |                                                                 GCGTGCTTCAGCGCAGCGTAAAGCGAAAGATCGTATTGACTTAGAGCGTCATTACGGTATTAAAA  >  W3110S.gb/3839994‑3840058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑