Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3898333	3898385	53	42 [0]	[0] 33	yiaJ	predicted DNA‑binding transcriptional repressor

CACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCAA  >  W3110S.gb/3898386‑3898450 |                                                                 cACCCGGACTACGTGAAGTCATACTGGGAAAGCCAt                               >  1:1203565/1‑36 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATc                              >  1:1811896/1‑37 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGAt                    >  1:576385/1‑47 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGc    >  1:1462126/1‑63 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:628770/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:389453/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:480220/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:526514/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:56455/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:625131/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1847926/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:725090/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:804603/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:946546/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:947153/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:952061/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:987557/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:989782/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:384661/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1873137/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:100754/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1818726/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1782740/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1588611/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1533578/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1440678/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:142111/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1413950/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1266662/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1207066/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1136973/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCaa  >  1:1009370/1‑65 (MQ=255) cACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCa   >  1:1330095/1‑64 (MQ=255) |                                                                 CACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAACCCGCAA  >  W3110S.gb/3898386‑3898450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑