Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4546099	4546169	71	7 [0]	[0] 38	fimB	tyrosine recombinase/inversion of on/off regulator of fimA

GCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGT  >  W3110S.gb/4546170‑4546234 |                                                                 gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGTATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:607086/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:385058/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:342798/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:417038/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:424553/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:476122/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:50474/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:53596/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:562770/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:573618/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:603381/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:616772/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:732824/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:76846/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:843877/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:853922/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:900579/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:955205/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:963139/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1642212/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1025899/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1055105/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1077443/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1109402/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1357117/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1515970/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1534591/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1546111/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:15664/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1016578/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1668763/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1757662/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1811894/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1886132/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:284277/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:290939/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:310359/65‑1 (MQ=255) gCCAGCAATGCAGGGCGTTTTTACGGCACCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGt  <  1:1695917/65‑1 (MQ=255) |                                                                 GCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGT  >  W3110S.gb/4546170‑4546234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑