Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	559948	559973	26	37 [0]	[0] 70	sfmD	predicted outer membrane export usher protein

CAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAG  >  W3110S.gb/559974‑560037 |                                                                cAGTGCCAATTTTACAACGCGAAGTGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1357428/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:3948/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:585447/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:552753/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:543203/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:517857/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:506460/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:494488/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:469065/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:422232/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:600581/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:359664/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:304670/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:28910/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:27876/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:276157/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:2743/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:236550/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:215435/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:786601/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:997157/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:983691/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:981276/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:973639/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:947197/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:905692/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:863138/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:859823/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1864989/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:777210/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:763475/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:740881/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:720088/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:710464/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:632820/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:609926/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:128/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1442627/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1437059/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1398516/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1382859/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1362218/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1343742/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1338588/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1308599/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1454138/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1270043/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1241193/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1238987/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1127356/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1117718/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1078606/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1055764/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1724633/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1855724/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1841766/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1830617/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1811039/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1810302/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1757071/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1756447/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1741332/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:104689/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1698198/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1605701/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1604729/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1532981/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1528974/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1493607/64‑1 (MQ=255) cAGTGCCAATTTTACAACGCGAAGGGCGTCTCAAATTTGACCTGACGGCGGGCGATTTTCGTAg  <  1:1672849/64‑1 (MQ=255) |                                                                CAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAG  >  W3110S.gb/559974‑560037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑