Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1173936	1174009	74	3 [0]	[0] 80	mfd	transcription‑repair coupling factor

AGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGAC  >  W3110S.gb/1174010‑1174074 |                                                                 aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCa                              >  1:1272298/1‑37 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgcccgac  >  1:960285/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1815976/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:469863/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:463960/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:439891/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:403812/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:257591/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:23035/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1882498/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1838063/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1822018/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:566403/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1795761/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1751177/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1735950/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1733671/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1724486/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1680672/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:525817/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:177266/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:588098/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:589943/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:595147/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:667418/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:734893/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:743680/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:810303/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:833998/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:877401/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:890408/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:914864/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:929802/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:940745/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:977994/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1295230/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1523585/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1663001/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1436595/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1435573/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1414730/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1390358/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1355622/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1349804/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1442870/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1286512/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1283290/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1183085/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1168258/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1154987/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1117256/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1033984/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1649905/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1643339/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1633372/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1576165/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1584398/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1586058/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1627262/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1588355/1‑65 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:1540678/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:1654196/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:960477/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:1028281/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:124822/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:1255319/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:1616409/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:1604440/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:1337439/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:727627/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:665219/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:1882136/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:339190/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:402313/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:457434/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccga   >  1:1569195/1‑64 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccg    >  1:681070/1‑63 (MQ=255) aGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgacc     >  1:443861/1‑62 (MQ=255) aGCATCAGATACTCGCCAGTAAAGCCACCCGCTTCCAGAGTGGTCa                     >  1:578319/1‑46 (MQ=255) aGCATCAGATACTCGCCAGCAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAAcgaccgac  >  1:1868383/1‑65 (MQ=255) |                                                                 AGCATCAGATACTCGCCAGTAATGCCACCCGCTTCCAGCGTGGTCATTCCGGCATAACGACCGAC  >  W3110S.gb/1174010‑1174074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑