Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	115258	115331	74	18 [0]	[0] 44	hofC	assembly protein in type IV pilin biogenesis, transmembrane protein

CGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGAAA  >  W3110S.gb/115332‑115396 |                                                                 cGTGCTGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:965550/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1043223/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:185894/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:197423/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:254858/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:377624/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:395472/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:445298/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:48338/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:591773/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:641558/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:709843/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:721277/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:726445/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:727006/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:824734/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:834706/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:900075/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:930244/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:932199/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:950092/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:145130/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1077655/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1106733/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1226257/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1248980/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1319944/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:135373/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1392153/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1396206/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1416453/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1480614/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1601214/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1650383/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1705706/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1719022/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1720716/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1756333/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGaaa  <  1:1834069/65‑1 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGa    >  1:1837420/1‑63 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGa    >  1:717792/1‑63 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGa    >  1:1524977/1‑63 (MQ=255) cGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGa    >  1:478166/1‑63 (MQ=255) cGTGCGGAGCATCGCCTGATAGAGCGGCGGAAATACCTCGGCCCAGGGTAATAAGGCATTgg     >  1:1427664/1‑62 (MQ=255) |                                                                 CGTGCGGATCATCGCCTGATAGAGCGGCGGAAATACCTCTGACCAGGGTAATAAGGCATTGGAAA  >  W3110S.gb/115332‑115396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑