Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	117471	117476	6	34 [0]	[0] 39	ppdD	predicted major pilin subunit

TGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGC  >  W3110S.gb/117477‑117541 |                                                                 tGGCGCTTAAAATGGCAATGATGCCAATACCCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:564112/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCTATAAGTGTAAAACCGCGTTGc  >  1:1328764/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAAc          >  1:358975/1‑57 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTg   >  1:522041/1‑64 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:220664/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:218496/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:305494/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:338627/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:429606/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:479912/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:537517/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:544063/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:568650/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:59893/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:650355/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:866374/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:90559/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:913194/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:929531/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:96350/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:156302/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1173556/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1221537/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1261304/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1294050/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1384670/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1396124/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1403103/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1416882/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1478407/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1012968/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1618992/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1646149/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:168721/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1733204/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1779093/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1819552/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:1846990/1‑65 (MQ=255) tGGCGCTTAAAATGGCAATGATGCCAATAACCACAATCAGTTCGATAAGTGTAAAACCGCGTTGc  >  1:38466/1‑65 (MQ=255) |                                                                 TGGCGCTTAAAATGGCAATGATGCCAATAACCACCATCAGTTCGATAAGTGTAAAACCGCGTTGC  >  W3110S.gb/117477‑117541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑