Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1711860	1711905	46	62 [0]	[0] 69	rsxD	predicted inner membrane oxidoreductase

AAAGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCGG  >  W3110S.gb/1711906‑1711969 |                                                                aaaGTGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1413414/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:366414/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:585555/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:583447/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:570751/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:547806/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:472281/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:442558/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:408261/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1855996/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:360483/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:348989/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:327963/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:252066/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:216573/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:204776/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1880962/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1783714/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:765306/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:994215/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:964843/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:944940/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:929283/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:921636/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:909725/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:854703/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:786541/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:585599/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:752059/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:724076/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:715311/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:659589/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:654438/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:616896/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:597347/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1128517/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1391256/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1347854/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1334655/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1330035/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1240819/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1223551/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1204549/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:119566/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:144874/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1120438/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1111374/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1103249/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1071084/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1053782/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1034904/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1017452/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1602735/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1015530/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1732177/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1706816/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1700479/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1656182/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1644173/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:164242/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:160729/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1785929/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1597039/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1579256/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1546452/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1540393/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1475314/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1459896/64‑1 (MQ=255) aaaGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCgg  <  1:1451847/64‑1 (MQ=255) |                                                                AAAGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCGG  >  W3110S.gb/1711906‑1711969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑