Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1966137	1966242	106	48 [0]	[0] 28	flhA	predicted flagellar export pore protein

TCCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAGCGCG  >  W3110S.gb/1966243‑1966307 |                                                                 tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:351076/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:995891/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:939816/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:938597/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:932355/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:820387/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:724510/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:583568/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:566327/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:549535/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:515488/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:499859/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:4272/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:374466/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:102641/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:242136/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1698107/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1596719/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1580049/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1528228/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1361025/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1358187/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1281182/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1217476/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1188809/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1152305/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1080954/65‑1 (MQ=255) tcCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAgcgcg  <  1:1057041/65‑1 (MQ=255) |                                                                 TCCGGCGTTAAGGTCGGCGTCAATCGCCATCTGCTTACCCGGCATACCATCGAGAACAAAGCGCG  >  W3110S.gb/1966243‑1966307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑