Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2015232	2015239	8	17 [0]	[0] 43	fliE/fliF	flagellar basal‑body component/flagellar basal‑body MS‑ring and collar protein

TTGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGACC  >  W3110S.gb/2015240‑2015303 |                                                                ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:561139/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:194877/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:273944/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:275005/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:311051/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:322478/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:335580/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:360074/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:476270/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:518430/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:551718/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1835355/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:622910/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:665240/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:6710/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:685876/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:720613/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:720679/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:786161/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:885455/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:885510/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:933029/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:154602/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1205754/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1327562/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:133336/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:134324/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1346622/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1380692/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1382287/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1406757/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1469666/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1475288/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:10085/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1597624/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1622988/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1650658/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1665597/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1679329/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1712291/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1763145/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1787444/64‑1 (MQ=255) ttGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGAcc  <  1:1809544/64‑1 (MQ=255) |                                                                TTGGCGGATAGAAAAAAACGAAAGCACAAATAATGGGAGCGTCAATTTTTCGAGTTTGCTGACC  >  W3110S.gb/2015240‑2015303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑