Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2075242	2075522	281	4 [0]	[0] 26	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

CCCGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGAAAA  >  W3110S.gb/2075523‑2075586 |                                                                cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:465327/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:987622/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:985018/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:770264/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:711202/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:659135/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:549528/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:507393/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:48870/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:480580/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1093304/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:292003/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1811297/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1672118/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1597600/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1588411/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1450629/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1411636/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1314017/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1228480/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1186948/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:117964/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:1104872/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGGCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:518382/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGGCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:518840/64‑1 (MQ=255) cccGGATATGGCACAGAACAATGCTGACAGACTGGGCATTGACGGCGGCAGGGCAACCGGaaaa  <  1:968036/64‑1 (MQ=255) |                                                                CCCGGATATGGCACAGAACAATGCTGACAGACTGGTCATTGACGGCGGCAGGGCAACCGGAAAA  >  W3110S.gb/2075523‑2075586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑