Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2100046	2100085	40	42 [0]	[0] 34	cld	regulator of length of O‑antigen component of lipopolysaccharide chains

TTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACC  >  W3110S.gb/2100086‑2100150 |                                                                 ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGTGAAGGCAGAAGTGAAGCGAca  <  1:489755/65‑2 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:755437/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:339800/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:383536/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:390470/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:430789/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:517447/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:719059/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:75355/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:332250/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:820111/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:822049/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:832501/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:843633/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:868413/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:87164/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:946159/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1553196/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1190862/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1206504/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1299969/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1395155/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1507092/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1507872/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1548749/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1058640/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1614115/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1623425/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1653529/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1654764/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1743662/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1797549/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:184990/65‑1 (MQ=255) ttttCTCGTTCTTCCTGATTATCCAGCGTTGCTGCTAATGCAGAGAAGGCAGAACTGAAGCGAcc  <  1:1324985/65‑1 (MQ=255) |                                                                 TTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACC  >  W3110S.gb/2100086‑2100150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑