Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2472693	2472836	144	43 [0]	[0] 66	intS	predicted prophage CPS‑53 integrase

TCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTG  >  W3110S.gb/2472837‑2472901 |                                                                 tCCTTCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:425533/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTTCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:761195/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:429778/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:565459/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:545770/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:542622/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:535079/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:524569/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:453138/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:45172/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:620412/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:41900/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:402063/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:374893/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:344909/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:113117/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:323252/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:336914/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:670014/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:717178/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:73570/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:767243/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:769444/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:834436/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:884065/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:896848/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:906948/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:968473/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:969188/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:978497/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:986167/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:989143/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1611946/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1148747/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1207325/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1242024/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1337840/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1345979/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1398849/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1449482/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1461407/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1487432/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1493595/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1521165/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1575883/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1590401/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1599398/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:312033/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1632749/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:304547/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:290451/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:228951/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:190747/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1863046/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1843961/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1820009/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:180861/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1799326/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1760984/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:172871/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1683244/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:1616722/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAACAAGAAGCCAATCTg  <  1:1312567/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGATTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:47729/65‑1 (MQ=255) tCCATCACCAAACCAGTCTCAGAGTTTGATTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:744961/65‑1 (MQ=255) tCCATCACAAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTg  <  1:44049/65‑1 (MQ=255) |                                                                 TCCATCACCAAACCAGTCTCAGAGTTTGTTTTTGCCGGGCGCAACGATAAGAAGAAGCCAATCTG  >  W3110S.gb/2472837‑2472901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑