Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2486415	2486484	70	39 [0]	[0] 55	emrY	predicted multidrug efflux system

CAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAT  >  W3110S.gb/2486485‑2486549 |                                                                 cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCatatat  <  1:1667/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:460476/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1759212/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1759225/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1775208/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1801343/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1809237/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1813387/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:200467/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:34598/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:398667/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:398892/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:407718/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:409063/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1729610/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:461432/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:489258/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:604991/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:640224/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:683820/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:715050/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:790263/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:817424/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:821492/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:846842/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:90551/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:917214/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:949477/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1429657/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1043363/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1057552/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1076356/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1078676/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1079299/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1093628/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1131917/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1186433/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1252096/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1269323/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:127342/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1348975/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:136145/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1740977/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1445386/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1460985/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1466294/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1479571/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1482629/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1527675/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1585726/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1608351/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:16349/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1679141/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1706505/65‑1 (MQ=255) cAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAt  <  1:1037426/65‑1 (MQ=255) |                                                                 CAACGGCGAATCCCTGAAAAAACTGCGGCAAAATGATGCCTGTAAAATCAATCGTTGGCATAAAT  >  W3110S.gb/2486485‑2486549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑