| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,251,803 | 1 | . | A | 36.4% | 129.8 / 191.7 | 118 | coding (613/1071 nt) | dhaK | dihydroxyacetone kinase, N‑terminal domain |
| Reads supporting (aligned to +/- strand): ref base . (75/0); new base A (43/0); total (118/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.59e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 119 total aligned reads displayed.
ACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTG > W3110S.gb/1251750‑1251859 | aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAgg > 1:1793062/1‑64 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAgg > 1:121728/1‑64 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:388538/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:14380/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:1558517/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:155946/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:158301/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:1632690/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:169572/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:185809/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:211526/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:344588/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:350980/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:352300/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:1005888/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:50455/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:538435/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:541184/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:549462/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:558107/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:695841/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:729776/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:808832/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:828201/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:858880/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:903523/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:908519/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:944523/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:1198994/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:1146462/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:1383214/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:1098557/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:1298799/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAAGAAGGt > 1:1117064/1‑65 (MQ=255)aCCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGT‑aaaa > 1:841204/1‑58 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCgg > 1:1030123/1‑35 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCa > 1:1379232/1‑52 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCTCCGAGAGCGATa > 1:302349/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGa > 1:415095/1‑62 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGAt > 1:1002669/1‑63 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:315056/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:270245/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1273367/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:437206/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1409576/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:51866/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1194046/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1177559/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:550132/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:577944/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:636764/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:110634/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:800513/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:975861/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:253247/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1339619/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1754895/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1796/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:183514/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1595478/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1504738/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1841281/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:1450172/1‑64 (MQ=255) aTTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATa > 1:26921/1‑64 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACa > 1:1371305/1‑42 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGc > 1:1323732/1‑54 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGa > 1:507166/1‑56 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTAtt > 1:833011/1‑64 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTAtt > 1:1560770/1‑64 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTAtt > 1:1012667/1‑64 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTAtt > 1:1350593/1‑64 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTAtt > 1:1407272/1‑64 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTAtt > 1:332475/1‑64 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1378844/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:203121/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1404732/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1014917/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:903024/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1025502/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:342541/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1330534/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1214241/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:360354/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1567032/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:735074/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1577838/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:497711/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:69034/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1587399/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:608769/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:600117/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:58599/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:121086/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:569506/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:405880/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1681234/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:116690/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:45964/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:491566/1‑65 (MQ=255) cGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTg > 1:1765401/1‑65 (MQ=255) | ACCCGGCTCACCATGAATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGT‑AAAAGAAGGTTTGCCCGCGGCAGGAACGGTACAGGCACCGAGAGCGATACCTATTG > W3110S.gb/1251750‑1251859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |